Google Earth Phylogenetics
I’ve been looking for a way to integrate the trees (and networks) I’ve been working on for Karnic with geographic data. I was talking to Russell Gray about this and he mentioned some tools for doing this using Google Earth, and a bit of hunting produced Mesquite and its Cartographer addon. I must say that the documentation and interface for Mesquite is a little clunky (it’s basically a command-line interface in menu form), but it does what I want it to. After a bit of fiddling and prodding I was able to get all the bits of the project (the tree, the language list, the map for display and the coordinate data) to understand each other and I produced this:
There are still some things to work out (and the phylogeny program needs to run another few days and I need to try out some other models before saying ‘this is the definitive tree’) but I’m really happy about how this is going to work as a display and analysis tool.
Update: .kml file.
January 20, 2009 at 6:53 pm
That is so cool! I’ll be playing around with it for IE (teaching intro IE this semester).
January 20, 2009 at 7:01 pm
This is interesting. Could you upload a kml file or just a larger screen shot – it’s a little difficult to make out the details in the image above!
Thanks for a great blog, I always enjoy having a read.
January 20, 2009 at 7:24 pm
Hi Mick, the link to the kml file is now in the post. thanks for reading! I may be picking your brains on climate change data before too long…
January 20, 2009 at 8:52 pm
Neat!
January 21, 2009 at 5:59 am
Hi Claire, that’s gorgeous. I particularly like the way it descends from space: very Mutant Message Downunder.
January 21, 2009 at 11:30 pm
It proves that aliens discovered Australia! MCMCMMD… I like it!
January 22, 2009 at 4:01 pm
@ claire – thanks! It looks great in GE. Feel free to pick my brains as needed!
January 23, 2009 at 6:42 pm
In case you have questions about Mesquite, I’ve used it a lot…